Jupyter Notebooks are documents which can contain live (Python) code, equations, visualizations and narrative text and can be used as an intuitive interface for OGS projects. The following video gives an introduction to using OpenGeoSys with Jupyter Notebooks:
You can start with pre-defined container environment from one of the images
With Docker:
docker run --rm -p 8888:8888 -v $PWD:/home/jovyan/work --user `id -u $USER` \
--group-add users quay.io/jupyter/scipy-notebookThis mounts your current directory into ~/work inside the container.
The above command only works when you run Docker from within a WSL2 Linux shell!
If your current working contains spaces write out $PWD, e.g.:
... -v /c/Users/My\ Name/working/directory:/home/jovyan/work ...With Singularity:
singularity run docker://quay.io/jupyter/scipy-notebookOpen the specified URL shown in the command output in your browser, e.g.
http://127.0.0.1:8888/lab?token=xxxYou may have to modify the IP address if this is running on a remote machine.
Click on Terminal and install OGSTools (which also installs ogs itself):
pip install ogstoolsYou install other Python packages too. Please note that this is a temporary installation. If you stop the container the manually installed packages will be deleted.
This article was written by Lars Bilke. If you are missing something or you find an error please let us know.
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Last revision: April 8, 2024
Commit: [ci,docs] Removed self-build jupyter container, adapt docs to use docker-stacks. 8046603
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