Project file on GitLab
## Equations

## Problem specification and analytical solution

## Input files

## Running simulation

## Results and evaluation

We start with simple linear homogeneous elliptic problem: $$ \begin{equation} k\; \Delta h = 0 \quad \text{in }\Omega \end{equation}$$ w.r.t boundary conditions $$ \eqalign{ h(x) = g_D(x) &\quad \text{on }\Gamma_D,\cr k\;{\partial h(x) \over \partial n} = g_N(x) &\quad \text{on }\Gamma_N, }$$

where $h$ could be hydraulic head, the subscripts $D$ and $N$ denote the Dirichlet- and Neumann-type boundary conditions, $n$ is the normal vector pointing outside of $\Omega$, and $\Gamma = \Gamma_D \cup \Gamma_N$ and $\Gamma_D \cap \Gamma_N = \emptyset$.

We solve the Laplace equation on a square domain $[0\times 1]^2$ with $k = 1$ w.r.t. the specific boundary conditions: $$ \eqalign{ h(x,y) = 1 &\quad \text{on } (x=0,y) \subset \Gamma_D,\cr h(x,y) = -1 &\quad \text{on } (x=1,y) \subset \Gamma_D,\cr k\;{\partial h(x,y) \over \partial n} = 0 &\quad \text{on }\Gamma_N. }$$ The solution of this problem is $$ h(x,y) = 1 - 2x. $$

The main project file is `square_1e2.prj`

. It describes the processes to be solved and the related process variables together with their initial and boundary conditions. It also references the mesh and geometrical objects defined on the mesh.

As of now a small portion of possible inputs is implemented; one can change:

- the mesh file
- the geometry file
- introduce more/different Dirichlet boundary conditions (different geometry or values)

The geometries used to specify the boundary conditions are given in the `square_1x1.gml`

file.

The input mesh `square_1x1_quad_1e2.vtu`

is stored in the VTK file format and can be directly visualized in Paraview for example.

To start the simulation (after successful compilation) run:

```
ogs square_1e2.prj
```

It will produce the output files `square_1e2_pcs_0.pvd`

,
`square_1e2_pcs_0_ts_0_t_0.000000.vtu`

and
`square_1e2_pcs_0_ts_1_t_1.000000.vtu`

. The last file contains the results
computed in the first time step.

The output on the console will be similar to the following one (ignore the spurious error messages “Could not find POINT…"):

```
error: GEOObjects::getGeoObject(): Could not find POINT "left" in geometry.
error: GEOObjects::getGeoObject(): Could not find POINT "right" in geometry.
info: Initialize processes.
info: Solve processes.
info: -> max. absolute value of diagonal entries = 2.666667e-06
info: -> penalty scaling = 1.000000e+10
info: ------------------------------------------------------------------
info: *** LIS solver computation
info: -> solve
initial vector x : user defined
precision : double
linear solver : CG
preconditioner : none
convergence condition : ||b-Ax||_2 <= 1.0e-16 * ||b-Ax_0||_2
matrix storage format : CSR
linear solver status : normal end
info: iteration: 28/1000000
info: residual: 3.004753e-17
info: ------------------------------------------------------------------
```

A major part of the output was produced by the linear equation solver (LIS in this case).

This article was written by Dmitri Naumov. If you are missing something or you find an error please let us know.
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Commit: [MeL/IO] HDF5 : Improve get partition interface 26aa08fdd
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